Emergence and Rising Prevalence of Artemisinin Partial Resistance Marker Kelch13 P441L in a Low Malaria Transmission Setting in Southern Zambia.

Martin AC, Sadler JM, Simkin A, Musonda M, Katowa B, Matoba J, Schue J, Simulundu E, Bailey JA, Moss WJ, Juliano JJ, Fola AA

Prevalence of Asymptomatic non-Falciparum and Falciparum Malaria in the 2014-15 Rwanda Demographic Health Survey.

Gaither C, Morgan C, Kirby R, Karema C, Gashema P, White SJ, Topazian HM, Geibrecht D, Thwai K, Young NW, Boyter K, Munyaneza T, Muvunyi CM, Butera JD, Bailey JA, Mazarati JB, Juliano JJ

Baseline characteristics for phase II of the Kinshasa Malaria Cohort Study: cohort profile.

Kashamuka MM, Banek K, White SJ, Atibu JL, Mvuama NM, Bala JAM, Nseka TM, Kihuma G, Diallo AO, Nkalani M, Mahilu GE, Manenga F, Varun G, Vulu F, Mampuya PN, Dinglasan R, Bobanga T, Emch M, Juliano JJ, Parr JB, Mwapasa V, Tshefu AK

Population genomics of Plasmodium ovale species in sub-Saharan Africa.

Carey-Ewend K, Popkin-Hall ZR, Simkin A, Muller M, Hennelly C, He W, Moser KA, Gaither C, NiarĂŠ K, Aghakanian F, Feleke S, Brhane BG, Phanzu F, Kashamuka MM, Aydemir O, Sutherland CJ, Ishengoma DS, Ali IM, Ngasala B, Kalonji A, Tshefu A, Parr JB, Bailey JA, Juliano JJ, Lin JT

High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes.

Popkin-Hall ZR, Niaré K, Crudale R, Simkin A, Fola AA, Sanchez JF, Pannebaker DL, Giesbrecht DJ, Kim IE Jr, Aydemir Ö, Bailey JA, Valdivia HO, Juliano JJ

Temporal genomics in Southern Zambia shows rising prevalence of Plasmodium falciparum mutations linked to delayed clearance after artemisinin-lumefantrine treatment.

Fola AA, Kobayashi T, Hamapumbu H, Musonda M, Katowa B, Matoba J, Stevenson JC, Norris DE, Thuma PE, Wesolowski A, Moss WJ, Juliano JJ, Bailey JA

Evidence of artemisinin partial resistance in northwestern Tanzania: clinical and molecular markers of resistance.

Ishengoma DS, Mandara CI, Bakari C, Fola AA, Madebe RA, Seth MD, Francis F, Buguzi CC, Moshi R, Garimo I, Lazaro S, Lusasi A, Aaron S, Chacky F, Mohamed A, Njau RJA, Kitau J, Rasmussen C, Bailey JA, Juliano JJ, Warsame M

Application of a new highly multiplexed amplicon sequencing tool to evaluate Plasmodium falciparum antimalarial resistance and relatedness in individual and pooled samples from Dschang, Cameroon.

Sadler JM, Simkin A, Tchuenkam VPK, Gyuricza IG, Fola AA, Wamae K, Assefa A, NiarĂŠ K, Thwai K, White SJ, Moss WJ, Dinglasan RR, Nsango S, Tume CB, Parr JB, Ali IM, Bailey JA, Juliano JJ

Interchromosomal segmental duplication drives translocation and loss of P. falciparum histidine-rich protein 3.

Hathaway NJ, Kim IE, WernsmanYoung N, Hui ST, Crudale R, Liang EY, Nixon CP, Giesbrecht D, Juliano JJ, Parr JB, Bailey JA

Prevalence of mutations associated with artemisinin partial resistance and sulfadoxine-pyrimethamine resistance in 13Â regions in Tanzania in 2021: a cross-sectional survey.

Juliano JJ, Giesbrecht DJ, Simkin A, Fola AA, Lyimo BM, Pereus D, Bakari C, Madebe RA, Seth MD, Mandara CI, Popkin-Hall ZR, Moshi R, Mbwambo RB, NiarĂŠ K, MacInnis B, Francis F, Mbwambo D, Garimo I, Chacky F, Aaron S, Lusasi A, Molteni F, Njau RJA, Nhiga SL, Mohamed A, Bailey JA, Ishengoma DS

Population genomics of Plasmodium ovale species in sub-Saharan Africa.

Carey-Ewend K, Popkin-Hall ZR, Simkin A, Muller M, Hennelly C, He W, Moser KA, Gaither C, NiarĂŠ K, Aghakanian F, Feleke S, Brhane BG, Phanzu F, Mwandagalirwa K, Aydemir O, Sutherland CJ, Ishengoma DS, Ali IM, Ngasala B, Kalonji A, Tshefu A, Parr JB, Bailey JA, Juliano JJ, Lin JT

Development of new real-time PCR assays for detection and species differentiation of Plasmodium ovale.

He W, Sendor R, Potlapalli VR, Kashamuka MM, Tshefu AK, Phanzu F, Kalonji A, Ngasala B, Thwai KL, Juliano JJ, Lin JT, Parr JB

Population Genomics of Plasmodium malariae from Four African Countries.

Popkin-Hall ZR, Carey-Ewend K, Aghakhanian F, Oriero EC, Seth MD, Kashamuka MM, Ngasala B, Ali IM, Mukomena ES, Mandara CI, Kharabora O, Sendor R, Simkin A, Amambua-Ngwa A, Tshefu A, Fola AA, Ishengoma DS, Bailey JA, Parr JB, Lin JT, Juliano JJ

Single cell transcriptional changes across the blood stages of artemisinin resistant K13(580Y) Plasmodium falciparum upon dihydroartemisinin exposure.

Oduor CI, Connelly SV, Cunningham C, Rustamzade N, Zuromski J, Chin DM, Nixon C, Kurtis J, Juliano JJ, Bailey JA

Clinical and genomic diversity of Treponema pallidum subspecies pallidum to inform vaccine research: an international, molecular epidemiology study.

SeĂąa AC, Matoga MM, Yang L, Lopez-Medina E, Aghakhanian F, Chen JS, Bettin EB, Caimano MJ, Chen W, Garcia-Luna JA, Hennelly CM, Jere E, Jiang Y, Juliano JJ, PospĂ­ĹĄilovĂĄ P, Ramirez L, Ĺ majs D, Tucker JD, Vargas Cely F, Zheng H, Hoffman IF, Yang B, Moody MA, Hawley KL, Salazar JC, Radolf JD, Parr JB